Places for you to check out if you want to fix this
Interacting with the skull and the coffin at the end of the Restless Ghost, I had to manually click
The the cellar of draynor manor I had to do a couple of the lever flips
I had to also dig in the compost pile, and put the poisoned fish food in the fountain
I will append with any other issues I come across
Great start and great help not having to put much time into the quests myself. Thanks!